PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do022184.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 406aa    MW: 42931.7 Da    PI: 5.155
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do022184.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.21.5e-13198244354
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 ++h+e+ErrRR+riN  +++Lr+llP+      +K +Ka+ L ++++++k+L
  Do022184.1 198 KSHSEAERRRRERINAHLARLRSLLPNT-----TKTDKASLLAEVIQHVKEL 244
                 79*************************9.....8****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.022195244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-11198244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-15199265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-15199266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-13201250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.12E-5208247No hitNo description
CDDcd048732.46E-6282367No hitNo description
Gene3DG3DSA:3.30.70.2604.8E-4282331No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MGGHGDHHHQ EAGVLVDDDE DELEHEAGAC GGATSGVVEQ GVGDRGGGQE TAAGMVFESS  60
SSVGSVSANM ASSQILCWPP PPPQQQLHHH QQHSVGGSGG QAPFFPLLPP LPPQPPPPPP  120
FFADFYARRA LQFAYDHHHS GGASTSSDPL GLGGLYMGHH HGGSGMMMPP PFASSPFGDF  180
GRMTAQEIMD AKALAASKSH SEAERRRRER INAHLARLRS LLPNTTKTDK ASLLAEVIQH  240
VKELKRQTSE ITEEACPLPT ESDELTVDAS SDEDGRLVVR ASLCCDDRAD LLPDLIRALK  300
ALRLRALKAE ITTLGGRVKN VLVITGDDSA DAGCEGTADD DQQEEEAAPM SPQHTVASIQ  360
EALRAVMERT ASASAAEEPG AASSGAAVLK RQRTTSLSAI LENRSI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1203208ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1066490.0AK106649.1 Oryza sativa Japonica Group cDNA clone:002-113-F07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004984717.10.0PREDICTED: transcription factor bHLH30-like
SwissprotQ9S7Y11e-75BH030_ARATH; Transcription factor bHLH30
TrEMBLK4ALF00.0K4ALF0_SETIT; Uncharacterized protein
STRINGSi039730m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19183898
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.12e-55bHLH family protein